Tutorials

• Tutorial for cell-cell communication prediction for single-ST data with DeepTalk
  • Installation
  • Create a work folder and Download the data
  • Load spatial data
  • Single cell data
  • Prepare to integration
  • Integration sc/snRNA-seq and ST data
  • Prepare to inference of cell-cell communication
  • Generate training dataset and prediction dataset.
  • Prediction of spatial CCC at the single-cell resolution.
  • Visualize of the spatial CCC
• Tutorial for cell-cell communication prediction for non-single-cell ST data with DeepTalk
  • Loading datasets
  • Pre-processing
  • Deconvolution via DeepTalk
  • Prediction of spatial CCC at the single-cell resolution.
  • Visualize of the spatial CCC